Seconda giornata Toscana di Bioinformatica e Systems Biology

Firenze, 18 Ottobre 2013 - Ex presidenza della Facoltà di Medicina

 
 Scarica 

9:00 Registration and poster hang up

  

9:30 Opening remarks

 
Session 1: ALGORITHMS AND TOOLS
10:00 StreamingTrim 1.0: a Java software for dynamic trimming of 16SrRNA sequence data from metagenetic studies
Giovanni Bacci1,2, Marco Bazzicalupo1, Anna Benedetti2, Alessio Mengoni1
1 Department of Biology, University of Florence, Italy (Combo - Florence Computational Biology Group).
2 Agricultural Research Council /Research Centre for the Soil-Plant System (CRA-RPS), Roma, Italy

 

10:30 On efficient algorithms for the single individual haplotyping problem
Loredana M. Genovese, Filippo Geraci, Marco Pellegrini
Instituto di Informatica e Telematica, CNR, Pisa

 

11:00 Mobilomics in yeast
Giulia Menconi
Dipartimento di Informatica, Università di Pisa

 

11:30-11:45 Coffee Break

 

11:45 EXCAVATOR: detecting copy number variants from whole-exome sequencing data
Alberto Magi1, Lorenzo Tattini1, Romina D’Aurizio2, Gian Franco Gensini1
1 Dipartimento di Medicina Sperimentale e Clinica, Università di Firenze.
2 Instituto di Informatica e Telematica, CNR, Pisa.

  

Session 2: MODELING

12:15 Stochastic models in biology
Duccio Fanelli e Francesca Di Patti
Dipartimento di Fisica e Astronomia, Università di Firenze

 

12:45 Identification of a branching process model for adaptive immune response
Alessandro Boianelli, Elena Pettini, Gennaro Prota, Donata Medaglini, Antonio Vicino
Dip. di Ingegneria dell'Informazione e Scienze Matematiche, Università di Siena
Dipartimento di Biotecnologie Mediche, Università di Siena

 

13:15 – 14:30 Lunch

 

Session 3: CANCER APPLICATIONS

14:30 Two topics of ongoing research in Pisa: identification of pathway components and model-based cancer therapies
Paolo Milazzo
Dipartimento di Informatica, Università di Pisa

 

15:00 Role of microRNAs-Transcription Factors Gene Regulatory Networks dynamics in the onset and progression of human genetic tumors: the neuroendocrine MEN1 syndrome as a model
Ettore Luzi
Laboratory of Neuroendocrine Complex Diseases Center on Endocrine Hereditary Tumors, AOUC, Department of Surgery and Translational Medicine , University of Firenze

 

Session 4: PROTEINS

15:30 Different protein folds require different amino acid composition of their cores
Davide Alocci, Andrea Bernini, Pasquale Lista, Andrea Santarelli, Ottavia Spiga, Edoardo Morandi, Neri Niccolai
Department of Biotechnology, Chemistry and Pharmacy, University of Siena

 

16:00 A gateway for the determination of the 3D structure of biological macromolecules
Lucio Ferella, Andrea Giachetti, Antonio Rosato
Magnetic Resonance Center (CERM), University of Florence

 

16:30-17:00 Coffee Break

 

17:00 Round Table: La bioinformatica in Toscana: Presente e Futuro

 

18:00 Closing Remarks

 

Sponsored by

Novartis
Progetto bandiera Ineromics